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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015895.1_333_1196_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
333 - 1196
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CCCCACCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CCCCGCTGACCC
Flanking Amino Acid:
LQLLLLQVDVKDPHQAVKEL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
64.6
0.33
0.8
56.5
27
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
40.4
-0.7
2
43.78
44.1

Associated Gene:

Gene:
ERCC1
Ensembl Gene ID:
ENSAPLG00000025982
Chromosome:
PEDO01015895.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043895
21 - 3610
3590