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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015901.1_937_1149_R

Intron Information:

Intron Rank:
154368
Intron Class:
major
Intron Phase:
Intron Coordinates:
937 - 1149
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAAC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCATCCAGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.7
35.6
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
86.6
0.82
0.6
85.4
22
Minor 5ss
34
-1.8
3.1
44.4
43.7
Minor BPS
43.2
-0.4
2.2
62.68
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030563
Chromosome:
PEDO01015901.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018488
512 - 2000
1489