Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015908.1_2092_6723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2092 - 6723

Intron Length:

4632

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGATGTTG

5'SS Class:

major

3'SS Sequence:

GGACGTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

GTCATCTGGACG

Flanking Amino Acid:

MVFVMLSGFIA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.43

61.1

39.8

Major BPS

72.5

0.56

1.2

39.9

Major PPT

65.7

0.35

54.3

45.6

Minor 5ss

35.1

-1.7

3.4

43.3

45.4

Minor BPS

48.4

-0.2

1.6

52.38

42.2

Associated Gene:

Gene:

SLC5A5

Ensembl Gene ID:

ENSAPLG00000030976

Chromosome:

PEDO01015908.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023033

511 - 6726

6216