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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015908.1_5960_6272_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5960 - 6272
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCATCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAG
U12 Branch Point Sequence:
GCTGCCCCATCC
Flanking Amino Acid:
YPVIDYLFAQSRSDFIGGRV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
49.6
-0
1.6
59.7
46.7
Major PPT
64
0.32
0.9
53.8
35.5
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
42
-0.6
2.1
52.02
44.9

Associated Gene:

Gene:
JAK3
Ensembl Gene ID:
ENSAPLG00000018982
Chromosome:
PEDO01015908.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036623
5336 - 8274
2939