Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015908.1_6990_7072_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6990 - 7072

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

CCCCTGTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGGAA

U12 Branch Point Sequence:

AGGGGCTCACCT

Flanking Amino Acid:

TLTKTDNRVLEVEFPTLQEA

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

58.4

43.1

Major BPS

50.5

0.01

1.4

51.7

43.9

Major PPT

0.34

0.8

56.7

33.5

Minor 5ss

37.9

-1.4

43.6

Minor BPS

-0.6

2.2

54.94

46.7

Associated Gene:

Gene:

JAK3

Ensembl Gene ID:

ENSAPLG00000018982

Chromosome:

PEDO01015908.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036623

5336 - 8274

2939