Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015916.1_322_1301_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

322 - 1301

Intron Length:

980

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTGAC

U12 Branch Point Sequence:

AGGGGAGTGACC

Flanking Amino Acid:

SHADLLDARLGMKDAAELLG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

78.7

31.6

Major BPS

48.3

-0.1

1.3

40.8

41.4

Major PPT

86.3

0.82

0.8

81.2

30.8

Minor 5ss

39.8

-1.1

53.4

43.8

Minor BPS

34.8

-1.2

2.3

41.23

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024835

Chromosome:

PEDO01015916.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040178

285 - 6233

5949