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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015960.1_122_194_F

Intron Information:

Intron Rank:
143583
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
122 - 194
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCCCTC
5'SS Class:
weak_major
3'SS Sequence:
TCTCCATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCTCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
58
47.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
46.6
-0.3
3.2
67.7
43.5
Minor BPS
46.3
-0.3
2.1
63.02
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027378
Chromosome:
PEDO01015960.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037472
21 - 1132
1112