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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015961.1_1613_1730_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
1613 - 1730
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTTTTCTCCCCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
47.8
45.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.8
0.72
0.7
73.2
31.7
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
39.6
-0.7
3.6
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020906
Chromosome:
PEDO01015961.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024241
21 - 1887
1867