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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015961.1_483_1094_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
483 - 1094
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
GCG|GTGACTCAG
5'SS Class:
major
3'SS Sequence:
CTGGTCCATGCTG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGTCCAT
U12 Branch Point Sequence:
CCCTCCCCAGGT
Flanking Amino Acid:
PHLRFPGPGSALTQPASKSV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
56.2
44.5
Major BPS
47.8
-0.1
1.5
58.2
48.3
Major PPT
39.9
-0.5
3.2
54.9
40.5
Minor 5ss
34.1
-1.8
2.9
41.5
45
Minor BPS
39
-0.7
2.2
52.27
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020906
Chromosome:
PEDO01015961.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024241
21 - 1887
1867