About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015961.1_501_1730_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
501 - 1730
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGAGCCCCATTT
Flanking Amino Acid:
LLLAVLAHTSGSLVHAALTQ
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
47.8
45.3
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
77.4
0.62
0.7
69.1
31.4
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
41.8
-0.5
2
58.75
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020906
Chromosome:
PEDO01015961.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026886
21 - 1887
1867