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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01015985.1_444_549_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
444 - 549
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCCAG
U12 Branch Point Sequence:
GTTCCAGCCACT
Flanking Amino Acid:
RSYHLSQILRVPPKVVLEPP
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
44.3
-0.3
1.8
58.2
48.3
Major PPT
83.7
0.76
0.7
76.3
32.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
39
-0.7
2.6
63.97
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024917
Chromosome:
PEDO01015985.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029775
21 - 1826
1806