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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016003.1_1678_1749_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1678 - 1749
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCGCCGCTC
5'SS Class:
weak_major
3'SS Sequence:
GCTCGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAC
U12 Branch Point Sequence:
AGTCCCCAAAAA
Flanking Amino Acid:
RTLPGSPASEGSPFSSPPQI
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.3
52.5
41.5
Major BPS
46.3
-0.2
1
49
29.8
Major PPT
68.5
0.42
0.9
60.8
35.3
Minor 5ss
23.6
-3
4.2
32.1
42.9
Minor BPS
45.5
-0.3
2
58.69
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026637
Chromosome:
PEDO01016003.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043726
108 - 3018
2911