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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016004.1_552_622_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
552 - 622
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTCGC
5'SS Class:
major
3'SS Sequence:
TCTGTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GGGCGCTGACTT
Flanking Amino Acid:
SESGEGSTYSSFHYLDAWSP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
54.2
45
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
33.6
-1.9
3.1
44.8
43
Minor BPS
40.7
-0.6
2
51.75
42.7

Associated Gene:

Gene:
MOGS
Ensembl Gene ID:
ENSAPLG00000019370
Chromosome:
PEDO01016004.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027907
21 - 2444
2424