Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016066.1_1338_12648_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1338 - 12648

Intron Length:

11311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

TTTCTGTCCACC

Flanking Amino Acid:

FNSTIASRKQVTKMLAVVVV

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

73.5

0.58

73.6

32.5

Major PPT

76.6

0.6

0.9

66.7

40.6

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

43.3

-0.5

2.5

63.43

42.2

Associated Gene:

Gene:

TRHR

Ensembl Gene ID:

ENSAPLG00000006947

Chromosome:

PEDO01016066.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007203

21 - 13214

13194