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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016071.1_2458_2658_R

Intron Information:

Intron Rank:
138446
Intron Class:
major
Intron Phase:
Intron Coordinates:
2458 - 2658
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
GCTCACAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
85.7
0.8
0.7
83.6
24.7
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
43.5
-0.4
2
60.18
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022007
Chromosome:
PEDO01016071.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031751
861 - 2729
1869