Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016130.1_1307_2335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1307 - 2335

Intron Length:

1029

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

GTCTCTCTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACACAA

U12 Branch Point Sequence:

CAAGGAGTAACA

Flanking Amino Acid:

ADQTPYNVTAAFWRPGEPSD

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.3

72.2

39.5

Major BPS

60.7

0.27

67.2

29.6

Major PPT

79.1

0.66

0.8

76.7

Minor 5ss

35.8

-1.6

2.8

41.3

38.3

Minor BPS

37.6

-0.9

2.4

46.06

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020769

Chromosome:

PEDO01016130.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022614

503 - 2483

1981