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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016130.1_947_1172_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
947 - 1172
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTCCCTGATTT
Flanking Amino Acid:
LVVINTEAEQDFLYKEIRRQ
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
74.6
0.55
0.9
64.7
40.4
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
55.9
0.26
1.8
74.32
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020769
Chromosome:
PEDO01016130.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022614
503 - 2483
1981