Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016155.1_10862_11282_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10862 - 11282

Intron Length:

421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTTCTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TGGCCATTCATT

Flanking Amino Acid:

GLGVYLFRKQAAKKDAELGE

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.7

1.1

0.7

87.9

29.3

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

0.7

0.8

76.5

32.3

Minor 5ss

43.8

-0.7

2.8

57.8

46.8

Minor BPS

48.1

-0

67.42

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031244

Chromosome:

PEDO01016155.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037759

8891 - 13018

4128