Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016155.1_11680_11837_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11680 - 11837

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

TGGGCTGTGACC

Flanking Amino Acid:

ERLKEQAAELAWRRCLLPQN

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.7

34.4

Major BPS

0.22

1.2

52.4

43.3

Major PPT

81.7

0.71

0.7

72.7

32.1

Minor 5ss

31.4

-2.1

3.2

35.2

41.4

Minor BPS

46.5

-0.2

2.1

57.52

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031244

Chromosome:

PEDO01016155.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037759

8891 - 13018

4128

ENSAPLT00000021827

8047 - 13018

4972

ENSAPLT00000021327

8891 - 13018

4128