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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016155.1_2585_2713_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2585 - 2713
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATG
5'SS Class:
major
3'SS Sequence:
TGCCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GGCATATAAACA
Flanking Amino Acid:
QEKESSLHISAPFFLNARPL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
69
41.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.3
0.7
0.8
79.7
32.2
Minor 5ss
35.4
-1.7
3.3
48.6
47.1
Minor BPS
44
-0.4
1.9
50.38
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031244
Chromosome:
PEDO01016155.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037768
225 - 13018
12794