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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016155.1_2819_3923_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2819 - 3923
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
CTCTCATCATGT
Flanking Amino Acid:
GLGVYLFRKQATQATELEKK
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
42.4
-0.5
2.2
60.9
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031244
Chromosome:
PEDO01016155.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037768
225 - 13018
12794