Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016155.1_8863_8977_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

8863 - 8977

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCTGCTG

5'SS Class:

major

3'SS Sequence:

CTTCTGCCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAG

U12 Branch Point Sequence:

CTGCCCCTACTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.2

0.34

1.1

53.4

Major BPS

48.4

-0.1

1.5

56.9

40.5

Major PPT

76.2

0.59

0.8

73.2

31.7

Minor 5ss

27.9

-2.5

3.5

38.3

46.7

Minor BPS

47.6

-0.1

65.71

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031244

Chromosome:

PEDO01016155.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021827

8047 - 13018

4972