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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016160.1_13027_13673_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13027 - 13673
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TCCGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAC
U12 Branch Point Sequence:
GAGGCATCACCA
Flanking Amino Acid:
PDTTNVAIAEGDWVWLKKFP
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
49.2
-0
1.3
53.6
41.6
Major PPT
70.4
0.46
0.8
61.3
35
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
40.7
-0.7
2
46.82
42.4

Associated Gene:

Gene:
GUCY2D
Ensembl Gene ID:
ENSAPLG00000004449
Chromosome:
PEDO01016160.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004575
6924 - 19580
12657