Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016160.1_3157_3277_R

Intron Information:

Intron Rank:

129097

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3157 - 3277

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GGG|GTCAGGTTT

5'SS Class:

major

3'SS Sequence:

TACAGGCTTTGGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGTACAG

U12 Branch Point Sequence:

TTTTGGGGTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.3

70.4

42.5

Major BPS

40.5

-0.6

1.6

46.4

Major PPT

30.6

-1.1

3.3

46.5

45.5

Minor 5ss

37.6

-1.4

3.4

48.1

47.4

Minor BPS

35.6

-1.1

2.9

59.66

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016638

Chromosome:

PEDO01016160.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026811

21 - 3923

3903