About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016182.1_2092_2195_R

Intron Information:

Intron Rank:
149119
Intron Class:
major
Intron Phase:
Intron Coordinates:
2092 - 2195
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCGTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
TCTTGGGGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.2
37.4
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
72.7
0.51
0.9
69.1
37
Minor 5ss
38.8
-1.3
2.9
50
46.2
Minor BPS
35.5
-1
2.7
58.71
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027729
Chromosome:
PEDO01016182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040361
840 - 3656
2817
ENSAPLT00000025478
840 - 3656
2817
ENSAPLT00000022088
840 - 3656
2817