Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016182.1_2957_3052_R

Intron Information:

Intron Rank:

149124

Intron Class:

major

Intron Phase:

Intron Coordinates:

2957 - 3052

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATG|GCAGGTCCA

5'SS Class:

major

3'SS Sequence:

CTTTTTCCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTCAG

U12 Branch Point Sequence:

TTTTTCCCACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.68

1.1

66.9

37.7

Major BPS

48.8

-0

1.5

57.1

41.8

Major PPT

0.79

0.7

80.2

25.3

Minor 5ss

22.9

-3.1

3.8

29.6

37.9

Minor BPS

43.4

-0.6

2.2

57.32

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027729

Chromosome:

PEDO01016182.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040361

840 - 3656

2817