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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016212.1_3651_3742_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3651 - 3742
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAC
U12 Branch Point Sequence:
GAGCCCCCACCC
Flanking Amino Acid:
PLECTLRPGEILYFPDRWWH
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
46.4
-0.2
1.2
52.1
34.1
Major PPT
68.7
0.42
0.9
61.5
35
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
40.8
-0.7
2
47.34
41.2

Associated Gene:

Gene:
JMJD8
Ensembl Gene ID:
ENSAPLG00000019116
Chromosome:
PEDO01016212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037529
3570 - 4531
962