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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016212.1_4379_4485_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4379 - 4485
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCTCGCTGAGCT
Flanking Amino Acid:
STANTYSYRKVDVPFQEYVE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
44.8
-0.3
2.1
62.08
47.4

Associated Gene:

Gene:
JMJD8
Ensembl Gene ID:
ENSAPLG00000019116
Chromosome:
PEDO01016212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037529
3570 - 4531
962