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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016212.1_751_834_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
751 - 834
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TTTTCCCCACCC
Flanking Amino Acid:
YDEAIANLQRAYNLAKEQRL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
67.8
0.4
0.8
58.1
32
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
53
0.07
2.2
75.8
40.5

Associated Gene:

Gene:
STUB1
Ensembl Gene ID:
ENSAPLG00000004229
Chromosome:
PEDO01016212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004354
21 - 3322
3302