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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016226.1_4979_5222_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4979 - 5222
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TTTTCCTTTGCA
Flanking Amino Acid:
SSIQPLSDKLVNFTVKAEMG
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
66.9
36.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
43.5
-0.7
3.1
57.9
42
Minor BPS
49.3
-0
3.6
83.52
37

Associated Gene:

Gene:
TMEM106C
Ensembl Gene ID:
ENSAPLG00000022157
Chromosome:
PEDO01016226.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036511
3169 - 6731
3563