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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016226.1_6195_6303_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6195 - 6303
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTTTTTTTGCTT
Flanking Amino Acid:
TCQGTGCIPTEQVNELVALI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
40.2
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
89
0.88
0.7
81
36.6
Minor 5ss
33.1
-1.9
3.4
39.6
45.9
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
TMEM106C
Ensembl Gene ID:
ENSAPLG00000022157
Chromosome:
PEDO01016226.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036511
3169 - 6731
3563