Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016241.1_4097_4283_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4097 - 4283

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGCACA

5'SS Class:

major

3'SS Sequence:

TTCCCCCCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTGAC

U12 Branch Point Sequence:

AGGGTGTGACCC

Flanking Amino Acid:

LLTIRIRSRAPSSSPGKQGT

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.24

1.3

58.9

41.8

Major BPS

53.6

0.09

1.4

48.8

46.3

Major PPT

78.9

0.65

0.7

69.8

Minor 5ss

36.1

-1.6

2.9

45.7

42.5

Minor BPS

36.6

-1

2.1

41.29

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029180

Chromosome:

PEDO01016241.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042384

1058 - 5076

4019

ENSAPLT00000035599

1344 - 5076

3733