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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016253.1_1248_1332_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1248 - 1332
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCTTCCATCCCG
Flanking Amino Acid:
NLKLSPNPEEVAETFTLPLA
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
68
0.4
0.8
61
29.2
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
35.7
-1.2
3.7
51.44
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029547
Chromosome:
PEDO01016253.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044369
21 - 1853
1833