Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016256.1_4818_5607_R

Intron Information:

Intron Rank:

142693

Intron Class:

major

Intron Phase:

Intron Coordinates:

4818 - 5607

Intron Length:

790

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

ATTGCCGGAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

74.9

35.3

Major BPS

0.52

1.5

79.6

35.6

Major PPT

82.3

0.73

0.8

73.3

37.2

Minor 5ss

27.6

-2.6

32.2

42.5

Minor BPS

46.2

-0.3

2.2

63.01

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024041

Chromosome:

PEDO01016256.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041472

3444 - 5728

2285