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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016270.1_714_1302_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
714 - 1302
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
ACAGACTTAACT
Flanking Amino Acid:
VFLMALMATPGKKQSKKSCN
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
60.9
0.42
1.7
72.27
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023126
Chromosome:
PEDO01016270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044479
580 - 1360
781