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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016279.1_6480_6568_F

Intron Information:

Intron Rank:
137955
Intron Class:
major
Intron Phase:
Intron Coordinates:
6480 - 6568
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
TTTATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
66.7
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
33.4
-1.9
2.8
36.5
41.9
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024255
Chromosome:
PEDO01016279.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044941
3246 - 7792
4547
ENSAPLT00000042374
4039 - 7792
3754
ENSAPLT00000021051
5001 - 7792
2792