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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016279.1_6632_6744_F

Intron Information:

Intron Rank:
137956
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6632 - 6744
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTCTCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
56.2
0.14
0.9
55.5
20
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
42.9
-0.4
3.5
76.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024255
Chromosome:
PEDO01016279.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044941
3246 - 7792
4547
ENSAPLT00000042374
4039 - 7792
3754
ENSAPLT00000021051
5001 - 7792
2792