Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016316.1_3771_3858_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3771 - 3858

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CCGCATCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCGCAT

U12 Branch Point Sequence:

GGTCCCTCAGCA

Flanking Amino Acid:

YTGELYPTVIRQTGMGLANT

Intron Amino Acid Position:

449

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

49.4

-0

1.4

59.3

39.1

Major PPT

64.5

0.33

0.9

56.7

33.2

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

50.6

0.02

1.8

63.58

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013761

Chromosome:

PEDO01016316.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031713

746 - 4057

3312

ENSAPLT00000014334

746 - 4110

3365