Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016330.1_1457_1749_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1457 - 1749

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GTGTTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCGAAC

U12 Branch Point Sequence:

CGGCCTCGAACC

Flanking Amino Acid:

FSRGGNFGGRGGFGGSRGGG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

68.4

36.9

Major BPS

48.9

-0

1.3

Major PPT

83.7

0.76

0.9

36.6

Minor 5ss

27.7

-2.6

31.6

37.6

Minor BPS

44.6

-0.4

1.7

50.21

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024423

Chromosome:

PEDO01016330.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047381

21 - 2982

2962

ENSAPLT00000037295

21 - 2982

2962