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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016350.1_11277_11615_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11277 - 11615
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTTATTTTG
5'SS Class:
weak_major
3'SS Sequence:
TCCCTGCAGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATATCACT
Flanking Amino Acid:
ALSRLLEPLCLGKLQPWSQG
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.3
57
42.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
60.7
0.24
1.1
53.9
40.7
Minor 5ss
43.2
-0.8
2.8
61.3
42.9
Minor BPS
47.3
-0.1
2.2
75.43
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000886
Chromosome:
PEDO01016350.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000867
11239 - 13220
1982