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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016363.1_147_1374_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
147 - 1374
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
CCTCTCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
CCAGCCCTATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.7
45
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
73.5
0.53
0.9
72
32.6
Minor 5ss
32.3
-2
3
31
43.1
Minor BPS
44.7
-0.4
2
51.38
45.5

Associated Gene:

Gene:
HAPLN3
Ensembl Gene ID:
ENSAPLG00000029390
Chromosome:
PEDO01016363.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011704
21 - 3306
3286