About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016374.1_105_185_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
105 - 185

Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGC|GTGAGTCAC

5'SS Class:
major

3'SS Sequence:
TGCATCCCCGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGCAT

U12 Branch Point Sequence:
TCCCCCTCACTA

Flanking Amino Acid:
PPGTYGPECLPCAGGRQQPC

Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.9
0.33
1.3
59.3
41.8

Major BPS
75
0.62
1.4
85.7
34.9

Major PPT
69
0.43
0.9
62.1
34.6

Minor 5ss
30
-2.3
2.8
31
35.4

Minor BPS
47.7
-0.1
1.8
56.52
43.2

Associated Gene:

Gene:
CRELD1

Ensembl Gene ID:

Chromosome:
PEDO01016374.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 1690
1670

21 - 1690
1670