About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016374.1_569_664_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
569 - 664

Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCG|GTGGGTGTG

5'SS Class:
major

3'SS Sequence:
GCCCCCCCCGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTGGCAT

U12 Branch Point Sequence:
ATGGTGGCATCT

Flanking Amino Acid:
GWVLHEHRCIDIDECGTEMA

Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.5
0.53
1.1
63.5
42.9

Major BPS
46.9
-0.1
1.6
57.1
49.4

Major PPT
65
0.34
0.8
57.4
27

Minor 5ss
29.9
-2.3
3.5
39.9
46.1

Minor BPS
31.6
-1.3
2.5
49.18
44.7

Associated Gene:

Gene:
CRELD1

Ensembl Gene ID:

Chromosome:
PEDO01016374.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 1690
1670