Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016380.1_4898_5349_R

Intron Information:

Intron Rank:

138070

Intron Class:

major

Intron Phase:

Intron Coordinates:

4898 - 5349

Intron Length:

452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACAC

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

AGCTCCAGAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

71.2

34.5

Major BPS

84.8

0.86

85.7

34.9

Major PPT

72.5

0.51

0.9

65.8

35.4

Minor 5ss

26.8

-2.7

2.9

32.6

42.4

Minor BPS

47.4

-0.2

1.8

57.35

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021811

Chromosome:

PEDO01016380.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020968

4307 - 5459

1153