Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016382.1_969_1808_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

969 - 1808

Intron Length:

840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGTA

5'SS Class:

strong_major

3'SS Sequence:

ACCTTACTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TGTTTCTTACCC

Flanking Amino Acid:

WKQRLFLTHKEGAISRVACC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.2

0.97

0.8

82.2

30.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

77.8

0.62

0.9

73.9

35.1

Minor 5ss

32.8

-2

3.7

46.2

49.1

Minor BPS

70.4

0.62

1.6

78.59

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023894

Chromosome:

PEDO01016382.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044827

21 - 2720

2700