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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016389.1_1135_2589_R

Intron Information:

Intron Rank:
141804
Intron Class:
major
Intron Phase:
Intron Coordinates:
1135 - 2589
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGACAA
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
49.8
-0
1.1
58.8
38.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023631
Chromosome:
PEDO01016389.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041627
794 - 7914
7121
ENSAPLT00000032512
794 - 7914
7121
ENSAPLT00000018056
794 - 7914
7121