Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016389.1_2750_5054_R

Intron Information:

Intron Rank:

141805

Intron Class:

major

Intron Phase:

Intron Coordinates:

2750 - 5054

Intron Length:

2305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TGCCATCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAA

U12 Branch Point Sequence:

TATGCATTCAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

38.4

Major BPS

74.6

0.61

65.6

41.4

Major PPT

68.4

0.41

0.9

34.9

Minor 5ss

-2.3

2.9

32.9

41.9

Minor BPS

47.5

-0.1

2.2

71.75

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023631

Chromosome:

PEDO01016389.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032512

794 - 7914

7121

ENSAPLT00000018056

794 - 7914

7121