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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016389.1_2750_5899_R

Intron Information:

Intron Rank:
141811
Intron Class:
major
Intron Phase:
Intron Coordinates:
2750 - 5899
Intron Length:
3150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TGCCATCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TATGCATTCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
68.4
0.41
0.9
61
34.9
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
47.5
-0.1
2.2
71.75
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023631
Chromosome:
PEDO01016389.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020267
1684 - 6441
4758