Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016389.1_3654_5054_R

Intron Information:

Intron Rank:

141834

Intron Class:

major

Intron Phase:

Intron Coordinates:

3654 - 5054

Intron Length:

1401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTCACTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

TTCTTCTTCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

38.4

Major BPS

77.5

0.68

79.6

Major PPT

85.1

0.79

0.8

79.5

32.4

Minor 5ss

-2.3

2.9

32.9

41.9

Minor BPS

71.2

0.75

1.7

86.99

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023631

Chromosome:

PEDO01016389.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044409

3611 - 7914

4304