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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01016389.1_5087_5899_R

Intron Information:

Intron Rank:
141806
Intron Class:
major
Intron Phase:
Intron Coordinates:
5087 - 5899
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTGCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
TTTGCCCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
76.2
0.59
0.8
69.5
31.3
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
46.4
-0.2
2.3
68.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023631
Chromosome:
PEDO01016389.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032512
794 - 7914
7121
ENSAPLT00000023509
4538 - 7914
3377
ENSAPLT00000018056
794 - 7914
7121
ENSAPLT00000044409
3611 - 7914
4304
ENSAPLT00000041627
794 - 7914
7121